Apple Muffins
- By Jennifer Segal
- Updated October 8, 2026
- 305 Comments
- Leave a Review
This post may contain affiliate links. Read my full disclosure policy.
These apple muffins are packed with fresh apples and warm spices, with a tender crumb and crunchy brown sugar tops.

I’ve made a lot of apple muffin recipes the years, but I especially love these because they strike a nice balance between wholesome and indulgent. The recipe, adapted from King Arthur Baking, uses a combination of whole wheat and all-purpose flour, which gives the muffins a little more substance without making them heavy. Yogurt keeps them moist, while a generous amount of chopped apple ensures you get fruit in every bite.
The finishing touch is a sprinkle of brown sugar before baking, which bakes up into a deliciously crunchy crust on top. They’re especially good warm from the oven, but they stay moist for days, making them great for breakfast or an afternoon snack.
“A perfect muffin recipe! The house smelled marvelous, too!”
What You’ll Need To Make Apple Muffins

- Butter & Egg: The butter adds richness and helps keep the crumb tender, while the egg provides structure.
- Granulated & Brown Sugar: Sweeten the muffins and help keep them moist. Brown sugar is also sprinkled over the tops before baking to create a sweet, crunchy crust.
- Plain Yogurt: Keeps the muffins moist and tender and works with the baking soda to help them rise. Plain low-fat or Greek yogurt both work well.
- Whole Wheat & All-Purpose Flour: The combination gives the muffins some of the nutty flavor and substance of whole wheat while keeping them tender. Using all whole wheat flour can make them dry, but white whole wheat flour can be used in place of both flours.
- Baking Powder & Baking Soda: Work together to give the muffins lift.
- Cinnamon, Nutmeg & Cloves: Cinnamon leads the way, with nutmeg and cloves adding extra warmth and depth.
- Apples: Use firm apples that hold their shape when baked, such as Granny Smith, Honeycrisp, Gala, Jonagold, Jonathan, or Golden Delicious. The chopped apples add moisture and ensure you get pieces of fruit throughout the muffins.
- Jump to the printable recipe for precise measurements
How To Make Apple Muffins
Mix the wet ingredients: Beat the butter and granulated sugar until noticeably lighter in color and fluffy, scraping down the bowl as needed. Beat in the egg until well combined, then add the yogurt. The mixture may look a little curdled or lumpy after the yogurt goes in; that’s normal.




Add the dry ingredients: Add the flours, leaveners, salt, and spices, and mix just until no streaks of flour remain. The batter will be very thick and scoopable.


Fold in the apples: Gently fold in the chopped apples until evenly distributed. It may look like a lot of apples at first, but they’ll work their way into the thick batter. Stop folding once the fruit is evenly dispersed.


Fill the muffin cups: Divide the batter among the muffin cups. They should be quite full, with the thick batter mounded slightly above the rims. Sprinkle the brown sugar over the tops.


Bake: Bake until the muffins are well risen and golden brown, with slightly domed tops. A tester inserted into the center should come out clean or with a few moist crumbs, but no wet batter. Let the muffins cool briefly in the pan before transferring them to a rack.

If you love baking with apples, be sure to try my apple bread or apple cake. The bread has a sweet cinnamon ribbon running through it, while the cake is buttery, tender, and packed with fresh apples.
More Muffin Recipes You May Like
Spiced Apple Muffins
Ingredients
- ½ cup (8 tablespoons) unsalted butter, at room temperature
- ½ cup granulated sugar
- ¼ cup (packed) dark brown sugar
- 1 large egg
- 1 cup plain low-fat yogurt or Greek yogurt
- 1 cup whole wheat flour, spooned into measuring cup and leveled off
- 1 cup all-purpose flour, spooned into measuring cup and leveled off
- 1 teaspoon baking powder
- 1 teaspoon baking soda
- ½ teaspoon salt
- 1 tablespoon ground cinnamon
- ½ teaspoon ground nutmeg
- ¼ teaspoon ground cloves
- 2 cups peeled cored, and finely chopped baking apples (you'll need 2 large apples)
For Topping
- 6 tablespoons (packed) dark brown sugar
Instructions
- Preheat the oven to 375°F (190°C). Grease a 12-cup muffin pan with butter or spray with non-stick cooking spray.
- In the bowl of an electric mixer, beat together the butter, granulated sugar and brown sugar until fluffy, 1 to 2 minutes. Scrape down the sides of the bowl with a rubber spatula.
- Add the egg and mix well, stopping to scrape the bowl if necessary.
- Beat in the yogurt. The batter will look a little curdled—that's okay.
- Add the flours, baking powder, baking soda, salt, cinnamon, nutmeg and cloves. Beat on low speed until just combined. The batter will be very thick.
- Add the chopped apples and mix until just combined. Do not over-mix.
- Use an ice-cream scooper or large spoon to divide the batter evenly among the prepared muffin cups. The cups should be full. Sprinkle the 6 tablespoons of brown sugar evenly over top.
- Bake the muffins for 25 to 30 minutes, or until a toothpick inserted into the center of a muffin comes out clean.
- Remove the muffins from the oven, cool them for 5 minutes in the pan, then turn them out onto a rack to finish cooling completely.
Notes
Nutrition Information
This website is written and produced for informational purposes only. I am not a certified nutritionist and the nutritional data on this site has not been evaluated or approved by a nutritionist or the Food and Drug Administration. Nutritional information is offered as a courtesy and should not be construed as a guarantee. The data is calculated through an online nutritional calculator, Edamam.com. Although I do my best to provide accurate nutritional information, these figures should be considered estimates only. Varying factors such as product types or brands purchased, natural fluctuations in fresh produce, and the way ingredients are processed change the effective nutritional information in any given recipe. Furthermore, different online calculators provide different results depending on their own nutrition fact sources and algorithms. To obtain the most accurate nutritional information in a given recipe, you should calculate the nutritional information with the actual ingredients used in your recipe, using your preferred nutrition calculator.
Add a Comment Cancel reply
This site uses Akismet to reduce spam. Learn how your comment data is processed.





Hi,
Do you think these muffins would be ok in mini muffin tins? If yes, could you recommend a baking time?
Hi Lorraine, Mini muffins would work here, just make sure to chop the apples into small chunks. I’d bake them for 10-15 minutes, or until a tester comes out clean.
Could I do this in a loaf pan? And can I do the brown sugar like with your cinnamon swirl apple bread? Got some greek yogurt I need to use. Thank you in advance Chef!
Yes and yes — hope you enjoy!
Hi Jen,
I made these muffins without the brown sugar topping and regretted it. The muffins did smell wonderful but tasted bland. It surprised me since the spices diffused a wonderful scent in my home.
Hello Danielle,
I included the brown sugar topping and the muffins tasted bland to me (sweet but bland).
Felicia B.
I only use Gluten Free flour because of celiac disease. This recipe calls for partial wheat
flour. Can I just substitute regular GF flour?
Sure!
Question: If I only have K.A. unbleached A.P flour, would the liquid measurements be the same? I THINK?? Whole wheat flour recipes use a hit mire liquid?? Not sure though
Hi Jo, all the measurements will be the same. Enjoy! 🙂
Made this as a 9×5 loaf and it turned out wonderful. I lowered temp to 350 and baked 45 minutes. I used a hand chopper to chop the apples into fine bits based on some comments mentioning grating the apples. Substitutions due to what I had on hand. 1/2 c. sour cream, 1/2 c. 2% yogurt. allspice vs cloves.
Turned out very moist. We really liked the flavor. Thanks, Jenn, for another great recipe.
These are in the oven now, they smell delicious. I did use sour cream though, I picked up vanilla yogurt by mistake. would this be okay in these muffins? Thanks!!
Hi Char, because vanilla yogurt has sugar added to it, going with sour cream was the right choice. Hope they taste as good as they smell!
Would adding raisins and chopped pecans work with this recipe or change the texture too much? If it would not be a bad match could you recommend amount of each. Thank you for your wonderful recipes and this easy to use site! Viki
Hi Viki, both would be nice here. I’d suggest 1/2 cup of each. I’d love to hear how they turn out!
I made these gorgeous muffins, they are easy to make, so very light and tasty. Perfect for the autumnal or winter season. I had to substitute ground cloves for mixed spice but this seemed to work well.
I am interested in making these muffins, and was wondering if I can substitute sour cream for the yogurt?
Sure!