Chipotle Chicken Quesadillas

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A smoky-sweet chipotle sauce takes these quesadillas from simple to next-level delicious, and they’re still easy enough for a weeknight.

chipotle chicken quesadillas on serving platter

Crisp flour tortillas stuffed with gooey melted cheddar and tender shredded chicken, all smothered in a sweet, smoky, and savory chipotle sauce—these could easily claim the title of the world’s best quesadillas. They’re like a grown-up twist on my classic chicken quesadillas: just as cheesy and satisfying, but with a bold, saucy flavor that makes them feel a little more special. The recipe is adapted from Curtis Stone, one of my favorite chefs and cookbook authors.

For the crispiest texture, quesadillas should be assembled and cooked just before serving. However, the chicken mixture can be prepared up to two days in advance, cooled, covered, and stored in the refrigerator. If you’ve got leftover quesadillas, they can be frozen for up to three months.

“Sweet Lord these were amazing!”

Lisa

What You’ll Need To Make Chipotle Chicken Quesadillas

chipotle chicken quesadillas ingredients
  • Red onion, garlic, and scallions: These aromatics build the flavor base, adding depth and just a hint of sweetness to balance the heat.
  • Chipotle peppers in adobo: Smoky, spicy, and rich, these canned peppers (usually smoked red jalapeños) are packed in a tangy tomato sauce and bring the signature flavor to these quesadillas. Look for them in the Latin section of most supermarkets. Want more ways to use them? Try my chipotle honey vinaigrette and black bean and corn salad.
  • Tomatoes: Fresh and slightly sweet, they add brightness and a little juiciness to the sauce.
  • Honey: A touch of sweetness to round out the heat from the chipotles and the acidity of the tomatoes.
  • Cooked shredded chicken: The hearty protein here; leftover or rotisserie chicken works great, and you can use white or dark meat.
  • Cilantro: Fresh and herby, it brightens everything up and ties the flavors together. Feel free to omit it if you’re not a fan.
  • Flour tortillas: The crispy golden shell that holds it all together.
  • Sharp cheddar cheese: Melty, creamy, and tangy; balances the smoky spice and makes the quesadillas irresistibly gooey.
  • Jump to the printable recipe for precise measurements

Step-by-Step Instructions

Step 1: Cook the aromatics. Begin by cooking the red onions and garlic in olive oil.

cooking the red onions and garlic in olive oil in a skillet

Step 2: Add the tomatoes and peppers. Cook, stirring often, until the mixture has thickened and most of the liquid has cooked off.

sauce for chipotle chicken quesadillas

Step 3: Finish the filling. Stir in the shredded chicken, salt, honey, green onions, and cilantro. Keep the mixture warm while you prep the quesadillas. (At this point, you can store the filling for up to two days.)

shredded chicken added to the sauce in the skillet

Step 4: Build the quesadillas. Heat a tortilla on a griddle or in a skillet. Sprinkle cheese evenly over the whole surface, then spoon the filling onto one half.

cooking the quesadilla in a skillet

Step 5: Flip and crisp. Once the cheese has mostly melted, fold the tortilla over the filling to form a half-moon. Cook until the quesadilla is golden and crisp on both sides, a few minutes per side. Repeat with the remaining tortillas.

folded quesadilla in skillet

Step 6: Cut and serve. Transfer the quesadillas to a cutting board, let them cool for a bit, then slice into wedges. Serve warm with sour cream, guacamole, lime wedges, or whatever you like.

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Chipotle Chicken Quesadillas

chipotle chicken quesadillas on serving platter

Cheesy, crispy, and just the right amount of spicy, these quesadillas hit all the right notes.

Servings: 6
Prep Time: 30 Minutes
Cook Time: 15 Minutes
Total Time: 45 Minutes

Ingredients

  • 3 tablespoons olive oil
  • 1 large red onion, chopped (about 1½ cups)
  • 4 garlic cloves, minced
  • ⅓ cup minced chipotle peppers in adobo sauce (you'll need about 6 chilis)
  • 4 vine-ripened tomatoes (about 1¼ pounds), seeded and diced
  • 3 scallions, thinly sliced
  • 2 tablespoons honey
  • 2½ cups cooked shredded chicken (white and/or dark meat)
  • 1 teaspoon salt
  • ½ cup chopped cilantro
  • 6 10-inch diameter flour tortillas
  • 4 cups shredded sharp cheddar cheese
  • Sour cream, for serving (optional)
  • Lime wedges, for serving (optional)

Instructions

  1. In a large sauté pan, heat the olive oil over medium heat. Add the onion and sauté until soft, about 5 minutes. Add the garlic and cook 1 minute more. Stir in the chipotle peppers and tomatoes. Cook until most of the liquid from the tomatoes has evaporated and the mixture is thickened, stirring often, about 20 minutes. Stir in the scallions, honey, chicken, salt and cilantro. Keep warm.
  2. Heat a sauté pan over medium heat and spray lightly with nonstick cooking spray. Lay a tortilla in the pan and heat until hot to the touch but not crisp (air pockets may form). Flip the tortilla over, then sprinkle ⅔ cup of the cheese evenly overtop, being careful to keep it off the pan. Spread a generous ½ cup of the chicken mixture over half of the tortilla. When the cheese is mostly melted, fold the tortilla over to cover the filling and form a half-moon shape. Cook until the tortilla is crisp and golden and the cheese is melted, adjusting the heat as necessary, a few minutes per side. Repeat with the remaining tortillas. Let the quesadillas rest a few minutes to allow the filling to set, then cut into wedges. Serve with sour cream and lime wedges, if desired.
  3. Note: If you have a large griddle, use that to make the quesadillas so you can make a few at a time. Also, be sure to serve your quesadillas hot of the pan (or off the griddle), otherwise, they’ll get soggy and the cheese will harden. If this does happen, you can pop them in a 350°F degree oven to heat them up, but they won’t be as crisp and gooey as they are fresh.
  4. Note: The nutritional information does not include the optional ingredients.
  5. Make-Ahead/Freezing Instructions: For the crispiest texture, the quesadillas should be assembled and cooked just before serving. However, the chicken mixture can be prepared up to two days in advance, cooled, covered, and stored in the refrigerator. Leftover quesadillas can be frozen for up to three months. To serve, defrost them in the refrigerator and then reheat, wrapped in foil, in an oven preheated to 350°F (175°C) until hot, which should take 15 to 20 minutes.

Nutrition Information

Powered by Edamam

  • Serving size: 1 quesadilla
  • Calories: 694
  • Fat: 45 g
  • Saturated fat: 19 g
  • Carbohydrates: 39 g
  • Sugar: 11 g
  • Fiber: 3 g
  • Protein: 34 g
  • Sodium: 1383 mg
  • Cholesterol: 121 mg

This website is written and produced for informational purposes only. I am not a certified nutritionist and the nutritional data on this site has not been evaluated or approved by a nutritionist or the Food and Drug Administration. Nutritional information is offered as a courtesy and should not be construed as a guarantee. The data is calculated through an online nutritional calculator, Edamam.com. Although I do my best to provide accurate nutritional information, these figures should be considered estimates only. Varying factors such as product types or brands purchased, natural fluctuations in fresh produce, and the way ingredients are processed change the effective nutritional information in any given recipe. Furthermore, different online calculators provide different results depending on their own nutrition fact sources and algorithms. To obtain the most accurate nutritional information in a given recipe, you should calculate the nutritional information with the actual ingredients used in your recipe, using your preferred nutrition calculator.

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Comments

  • Knocked it out of the park, as usual! Your recipes are so reliably delicious and always work for my family. Thank you for sharing them and sending great ideas. My son, a picky eater, has asked if I could just make a huge batch of the filling and leave it in the fridge on rotate for quesadillas every day after school! Hahaha

    Sounds like the answer is yes, but will the filling freeze well if I make a big batch and portion it out over time?

    • — Patricia on July 3, 2025
    • Reply
    • Patricia, so glad you’ve had good luck with the recipes (and that this one was a hit with your son)! Yes, I think it would be fine to freeze the filling – great idea!

  • These were a big hit in my house! I reduced the chipotle peppers a bit to suit our taste and they were scrumptious! Thank you for another great recipe.

    • — Melissa on May 27, 2025
    • Reply
  • Your recipes have never failed me. I made this recipe for the first time today and once again it was another delicious meal. Thank you for making me look like a star in the kitchen.

    • — Robin on January 23, 2025
    • Reply
  • These are quite yummy. I did cheat though, sieving the chipotle peppers to remove the seeds, and subbing 4 ounces of tomato sauce for the tomatoes (tomatoes being out of season in these parts). Terrific recipe, thanks!

    • — Al on January 22, 2025
    • Reply
  • I made these for the first time and they are delicious! With snowstorms in the forecast, I’m stocking my freezer full of fun meals. Since I didn’t, have enough fresh tomatoes, I added a can of fire roasted tomatoes. Your recipes never disappoint. Thanks, Jenn!

    • — Gina on January 19, 2025
    • Reply
  • Hi Jenn
    Just curious does the amount of chiles called for in the recipe include the adobo sauce? For the people who are concerned about the spice level could they just scrape out the seeds? I think most of the heat comes from the seeds.
    Chris

    • — Chris on October 15, 2024
    • Reply
    • Hi Chris, you’ll just want to use the sauce that’s clinging to the peppers when you pull them out of the can. The quesadillas aren’t overly spicy, but if you’re sensitive to heat or making these quesadillas for kids, just use fewer peppers.

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