Chipotle Chicken Quesadillas
- By Jennifer Segal
- Updated September 4, 2025
- 340 Comments
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A smoky-sweet chipotle sauce takes these quesadillas from simple to next-level delicious, and they’re still easy enough for a weeknight.

Crisp flour tortillas stuffed with gooey melted cheddar and tender shredded chicken, all smothered in a sweet, smoky, and savory chipotle sauce—these could easily claim the title of the world’s best quesadillas. They’re like a grown-up twist on my classic chicken quesadillas: just as cheesy and satisfying, but with a bold, saucy flavor that makes them feel a little more special. The recipe is adapted from Curtis Stone, one of my favorite chefs and cookbook authors.
For the crispiest texture, quesadillas should be assembled and cooked just before serving. However, the chicken mixture can be prepared up to two days in advance, cooled, covered, and stored in the refrigerator. If you’ve got leftover quesadillas, they can be frozen for up to three months.
“Sweet Lord these were amazing!”
What You’ll Need To Make Chipotle Chicken Quesadillas

- Red onion, garlic, and scallions: These aromatics build the flavor base, adding depth and just a hint of sweetness to balance the heat.
- Chipotle peppers in adobo: Smoky, spicy, and rich, these canned peppers (usually smoked red jalapeños) are packed in a tangy tomato sauce and bring the signature flavor to these quesadillas. Look for them in the Latin section of most supermarkets. Want more ways to use them? Try my chipotle honey vinaigrette and black bean and corn salad.
- Tomatoes: Fresh and slightly sweet, they add brightness and a little juiciness to the sauce.
- Honey: A touch of sweetness to round out the heat from the chipotles and the acidity of the tomatoes.
- Cooked shredded chicken: The hearty protein here; leftover or rotisserie chicken works great, and you can use white or dark meat.
- Cilantro: Fresh and herby, it brightens everything up and ties the flavors together. Feel free to omit it if you’re not a fan.
- Flour tortillas: The crispy golden shell that holds it all together.
- Sharp cheddar cheese: Melty, creamy, and tangy; balances the smoky spice and makes the quesadillas irresistibly gooey.
- Jump to the printable recipe for precise measurements
Step-by-Step Instructions
Step 1: Cook the aromatics. Begin by cooking the red onions and garlic in olive oil.

Step 2: Add the tomatoes and peppers. Cook, stirring often, until the mixture has thickened and most of the liquid has cooked off.

Step 3: Finish the filling. Stir in the shredded chicken, salt, honey, green onions, and cilantro. Keep the mixture warm while you prep the quesadillas. (At this point, you can store the filling for up to two days.)

Step 4: Build the quesadillas. Heat a tortilla on a griddle or in a skillet. Sprinkle cheese evenly over the whole surface, then spoon the filling onto one half.

Step 5: Flip and crisp. Once the cheese has mostly melted, fold the tortilla over the filling to form a half-moon. Cook until the quesadilla is golden and crisp on both sides, a few minutes per side. Repeat with the remaining tortillas.

Step 6: Cut and serve. Transfer the quesadillas to a cutting board, let them cool for a bit, then slice into wedges. Serve warm with sour cream, guacamole, lime wedges, or whatever you like.

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Chipotle Chicken Quesadillas
Ingredients
- 3 tablespoons olive oil
- 1 large red onion, chopped (about 1½ cups)
- 4 cloves garlic, minced
- ⅓ cup minced chipotle peppers in adobo sauce (you'll need about 6 chilis)
- 4 vine-ripened tomatoes, (about 1¼ lbs/567 g), seeded and diced
- 3 scallions, thinly sliced
- 2 tablespoons honey
- 2½ cups cooked shredded chicken (white and/or dark meat)
- 1 teaspoon salt
- ½ cup chopped cilantro
- 6 10-inch flour tortillas
- 4 cups shredded sharp cheddar cheese
- Sour cream, for serving (optional)
- Lime wedges, for serving (optional)
Instructions
- In a large sauté pan, heat the olive oil over medium heat. Add the onion and sauté until soft, about 5 minutes. Add the garlic and cook 1 minute more. Stir in the chipotle peppers and tomatoes. Cook until most of the liquid from the tomatoes has evaporated and the mixture is thickened, stirring often, about 20 minutes. Stir in the scallions, honey, chicken, salt and cilantro. Keep warm.
- Heat a sauté pan over medium heat and spray lightly with nonstick cooking spray. Lay a tortilla in the pan and heat until hot to the touch but not crisp (air pockets may form). Flip the tortilla over, then sprinkle ⅔ cup of the cheese evenly overtop, being careful to keep it off the pan. Spread a generous ½ cup of the chicken mixture over half of the tortilla. When the cheese is mostly melted, fold the tortilla over to cover the filling and form a half-moon shape. Cook until the tortilla is crisp and golden and the cheese is melted, adjusting the heat as necessary, a few minutes per side. Repeat with the remaining tortillas. Let the quesadillas rest a few minutes to allow the filling to set, then cut into wedges. Serve with sour cream and lime wedges, if desired.
Notes
- If you have a large griddle, use that to make the quesadillas so you can make a few at a time. Also, be sure to serve your quesadillas hot off the pan (or off the griddle); otherwise, they’ll get soggy, and the cheese will harden. If this does happen, you can pop them in a 350°F oven to heat them up, but they won’t be as crisp and gooey as they are fresh.
- The nutritional information does not include the optional ingredients.
- Make-Ahead/Freezing Instructions: For the crispiest texture, the quesadillas should be assembled and cooked just before serving. However, the chicken mixture can be prepared up to two days in advance, cooled, covered, and stored in the refrigerator. Leftover quesadillas can be frozen for up to three months. To serve, defrost them in the refrigerator and then reheat, wrapped in foil, in an oven preheated to 350°F (175°C) until hot, which should take 15 to 20 minutes.
Nutrition Information
This website is written and produced for informational purposes only. I am not a certified nutritionist and the nutritional data on this site has not been evaluated or approved by a nutritionist or the Food and Drug Administration. Nutritional information is offered as a courtesy and should not be construed as a guarantee. The data is calculated through an online nutritional calculator, Edamam.com. Although I do my best to provide accurate nutritional information, these figures should be considered estimates only. Varying factors such as product types or brands purchased, natural fluctuations in fresh produce, and the way ingredients are processed change the effective nutritional information in any given recipe. Furthermore, different online calculators provide different results depending on their own nutrition fact sources and algorithms. To obtain the most accurate nutritional information in a given recipe, you should calculate the nutritional information with the actual ingredients used in your recipe, using your preferred nutrition calculator.
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Made these last night for dinner and my son couldn’t stop raving about them. The chicken filling is even delicious on its own. Definitely going in the keeper file. Thank you for all the wonderful recipes!
Made this last night, my husband was drooling. We both loved it and it is also great for lunch the next day too. Great smokey flavour with a bit of heat. I will definitely be doing this again!
What kind of cheese did you use here, thanks.
Hi Charlene, I used sharp cheddar.
Love the clearcut directions on constructing a great looking quesadilla – something I had attempted, but not figured out. Mine looked great, but more importantly, tasted delicious. Much better than what you get at most restaurants. Will definitely make them again. Thank you, Jenn!
I made this recipe for a second time this weekend with shredded pork. I think it may have been better than the chicken! We added black beans and corn to some and they came out great.
Great idea, Kim. I look forward to trying it!
I made it & yet again it was a hit , just like the the other recipes I had made from your blog. Keep up the good work .
Thanks
Just finished devouring this meal! Very easy prep, though lots of chopping. Next time I will do the prep hours or a day inadvance. The flavor was WONDERFUL. It was a tad spicier than we like, but so , so good. I will cut back on the peppers next time.
Very good, great instructions and supporting pics. This will go in our rotation of favorite meals!
Next time, it would be more helpful if you repeated the quantity of the items within the instructions. I followed along on my iPad and spent a lot of time scrolling down to the quantity and then back to the instructions.
I tried this today. I liked the amount of heat and the rich taste. It was a hit at home. Thank you!
Wonder if this could be made as a stacked pie?
Hi Judy, I think it would work well. Please let me know how it turns out if you try it.
I live in the Southwest and I’m always looking for new recipes like this. I’m really glad that I can pick up a roasted chicken from my grocer for this recipe, and that most of these ingredients are already in my kitchen. This shall be tonight’s dinner! Thank you.